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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61736237_61737751_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61736237 - 61737751
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTCACGTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGGTTCTAAACA
Flanking Amino Acid:
LSNRKLFTPNDIDVVFSNIS
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.4
0.55
0.9
68.4
37.2
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
63.6
0.42
1.7
71.37
41

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812
ENSAPLT00000035802
61733451 - 61772100
38650
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600