About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61737896_61742419_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61737896 - 61742419
Intron Length:
4524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TCTGCCTTTATT
Flanking Amino Acid:
AGSCFEDLAEEQAFDPYETL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
74.4
0.55
0.9
73.5
36.1
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
64.5
0.54
1.8
79.54
43

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812
ENSAPLT00000035802
61733451 - 61772100
38650