About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61744554_61750424_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61744554 - 61750424
Intron Length:
5871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTATGTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATGT
Flanking Amino Acid:
HCLHYFELLQQLQECSEDEE
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.3
0.57
0.9
69.3
41.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
48.9
-0
2.1
73.38
43.4

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812
ENSAPLT00000035802
61733451 - 61772100
38650