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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61751570_61754744_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61751570 - 61754744
Intron Length:
3175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTCA
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTTCTTACTC
Flanking Amino Acid:
IERLTYHMYADPNFVRTFLT
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.2
59.7
42.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
48.6
-0.1
2.8
66.1
44.9
Minor BPS
66.4
0.49
1.6
74.33
36.8

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035802
61733451 - 61772100
38650
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812