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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61754827_61755484_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61754827 - 61755484
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATTGCCATCAGT
Flanking Amino Acid:
PQELLSLLIERFEIPEPEPT
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
43.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.8
0.53
0.9
68.8
37.1
Minor 5ss
44.5
-0.6
3.2
65.1
46.1
Minor BPS
46
-0.2
2.3
70.94
45.8

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000035802
61733451 - 61772100
38650