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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61754827_61759075_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61754827 - 61759075
Intron Length:
4249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATAATTATTT
Flanking Amino Acid:
PQELLSLLIERILNVFRHWV
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
43.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
44.5
-0.6
3.2
65.1
46.1
Minor BPS
48.4
-0
2
69.84
40.7

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045409
61720037 - 61770848
50812