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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61755608_61759075_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
61755608 - 61759075
Intron Length:
3468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTCTTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATAATTATTT
Flanking Amino Acid:
RKEYVQPVQLRILNVFRHWV
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.3
63.5
43.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
56.4
0.22
2
67.6
43.4
Minor BPS
48.4
-0
2
69.84
40.7

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035802
61733451 - 61772100
38650
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812