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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61759180_61760382_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61759180 - 61760382
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGACATTAAAA
Flanking Amino Acid:
RLETFISSVRGKSMKKWVES
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
0.8
77.4
36.7
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
54.7
0.14
1.8
65.6
40

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812
ENSAPLT00000035802
61733451 - 61772100
38650