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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61762565_61763293_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61762565 - 61763293
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTGACA
Flanking Amino Acid:
SVYRLDHTFEALQERKKRVL
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
63
0.29
1
60.4
40.2
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
72.6
0.71
1.2
73.69
38.7

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035802
61733451 - 61772100
38650
ENSAPLT00000031553
61734432 - 61771636
37205
ENSAPLT00000019197
61720037 - 61771636
51600
ENSAPLT00000005524
61720037 - 61770848
50812
ENSAPLT00000045409
61720037 - 61770848
50812