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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61767789_61769896_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61767789 - 61769896
Intron Length:
2108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TACTACACAAGC
Flanking Amino Acid:
FSDVDLNSSYETFFSSWGSF
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
38.1
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
85.1
0.79
0.7
77.1
31.6
Minor 5ss
38.8
-1.3
2.9
47.7
42.4
Minor BPS
42.3
-0.6
2.1
54
43.2

Associated Gene:

Gene:
SOS2
Ensembl Gene ID:
ENSAPLG00000005327
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005524
61720037 - 61770848
50812