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Intron Name: Anas_platyrhynchos_platyrhynchos_5_61775814_61776024_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61775814 - 61776024

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

CGCCGCCTCAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

CGCCCCTGAGGC

Flanking Amino Acid:

VAANVQPAAMAAAGGF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.04

0.7

89.2

17.6

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

47.1

-0.1

1.6

48.5

34.2

Minor 5ss

38.3

-1.3

2.9

47.2

Minor BPS

41.9

-0.6

1.9

45.35

42.8

Associated Gene:

Gene:

VCPKMT

Ensembl Gene ID:

ENSAPLG00000005825

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027553

61775796 - 61779191

3396