Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61813441_61814323_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61813441 - 61814323

Intron Length:

883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TCCGTTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCATATTTATCC

Flanking Amino Acid:

MALTDDFSGKGYIIQKKEKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

72.2

39.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

75.7

0.58

0.8

73.5

31.6

Minor 5ss

31.9

-2.1

3.2

43.3

44.4

Minor BPS

53.2

0.08

1.8

63.86

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006159

61813214 - 61829719

16506