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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61814561_61815593_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61814561 - 61815593
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGATCTTAAAAA
Flanking Amino Acid:
PYLEFDSFNKAADEFYSKLE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
51.2
0.03
1.7
60.74
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006159
61813214 - 61829719
16506