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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61820203_61820600_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61820203 - 61820600
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CCGTACACAACT
Flanking Amino Acid:
EIIVKRYLKPGDIYVHADLH
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
85.1
0.79
0.8
76.9
36.6
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
45.8
-0.2
2
62.06
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006159
61813214 - 61829719
16506