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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6182118_6184149_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6182118 - 6184149
Intron Length:
2032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAATTGTTACCA
Flanking Amino Acid:
SKLRLDHTFKRCRNH*
Intron Amino Acid Position:
1664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
48.6
-0.1
2.3
64.72
41.7

Associated Gene:

Gene:
QSER1
Ensembl Gene ID:
ENSAPLG00000006676
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039527
6180704 - 6202816
22113