About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61822429_61822945_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61822429 - 61822945
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGAGAA
Flanking Amino Acid:
YLTTGSFMIRGKKNFLPPSY
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
46.9
-0.2
2
63.17
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006159
61813214 - 61829719
16506