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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61823611_61823715_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61823611 - 61823715
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
CTGTGCACCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTCCTCACCT
Flanking Amino Acid:
ELVSEEVELLEGGDSSSEEE
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
52.8
46.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
61.9
0.27
0.9
55.5
35
Minor 5ss
35.5
-1.6
3.5
46.5
48.8
Minor BPS
71.8
0.76
1.8
92.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006159
61813214 - 61829719
16506