Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61825562_61825836_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61825562 - 61825836

Intron Length:

275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCAGG

5'SS Class:

major

3'SS Sequence:

TTTTCTTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GTTTCTAAAATT

Flanking Amino Acid:

APQPIKRGQKSKMKKMKEKY

Intron Amino Acid Position:

634

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

63.6

48.1

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

0.94

0.6

85.2

29.6

Minor 5ss

37.4

-1.4

3.1

48.3

47.5

Minor BPS

54.7

0.23

1.9

77.32

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006159

61813214 - 61829719

16506