Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61826186_61826771_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61826186 - 61826771

Intron Length:

586

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGTATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTTCTGTGTATA

Flanking Amino Acid:

PALEEQQDEKDDQEQDQPGV

Intron Amino Acid Position:

725

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

79.7

0.74

79.6

35.6

Major PPT

74.9

0.56

68.6

41.3

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

42.7

-0.5

2.3

60.85

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006159

61813214 - 61829719

16506