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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61826805_61827616_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61826805 - 61827616
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAGAA
U12 Branch Point Sequence:
TTCCCCAGAAGT
Flanking Amino Acid:
DQEQDQPGVEEAVALLDSLT
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
37.7
Major BPS
46
-0.2
1
38.2
30.5
Major PPT
80.8
0.69
0.8
74.3
30.8
Minor 5ss
38.3
-1.3
3.5
56.7
47.6
Minor BPS
48.2
-0
2
71.52
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006159
61813214 - 61829719
16506