Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61830809_61831596_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61830809 - 61831596

Intron Length:

788

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTAAGTTTA

5'SS Class:

major

3'SS Sequence:

TCTCTCCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATCAA

U12 Branch Point Sequence:

ACATCATCAAAC

Flanking Amino Acid:

ANNLLAHSKAAHSNEILVFS

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.3

75.4

37.3

Major BPS

66.5

0.41

1.1

68.2

37.5

Major PPT

82.4

0.73

0.7

73.7

31.4

Minor 5ss

45.6

-0.5

2.8

62.8

Minor BPS

47.6

-0.2

1.9

57.01

40.7

Associated Gene:

Gene:

KLHDC2

Ensembl Gene ID:

ENSAPLG00000006886

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007194

61830344 - 61841777

11434

ENSAPLT00000047132

61830344 - 61842270

11927