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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61839561_61840621_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61839561 - 61840621
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ACTGTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAACT
Flanking Amino Acid:
IWIYNMETGRWKKSKTEGDV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.1
58.1
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.6
0.42
0.9
58.7
42.5
Minor 5ss
34.5
-1.8
3.5
43
46.5
Minor BPS
63.3
0.5
1.6
78.4
38.1

Associated Gene:

Gene:
KLHDC2
Ensembl Gene ID:
ENSAPLG00000006886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007194
61830344 - 61841777
11434