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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61840702_61841609_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61840702 - 61841609
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAACT
Flanking Amino Acid:
RCMYVWGGYKNAQVRGFYDF
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.2
0.52
0.9
66
40
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
75.4
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
KLHDC2
Ensembl Gene ID:
ENSAPLG00000006886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007194
61830344 - 61841777
11434