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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61841778_61842199_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61841778 - 61842199
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TCTGCGCACGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTTCCAAGCC
Flanking Amino Acid:
GGQRREGSALSTLSTWLTTT
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
60.6
0.24
0.9
54.7
35.5
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
46
-0.3
2.1
63.44
42

Associated Gene:

Gene:
KLHDC2
Ensembl Gene ID:
ENSAPLG00000006886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047132
61830344 - 61842270
11927