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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61843619_61843942_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61843619 - 61843942
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTTACTTAAATC
Flanking Amino Acid:
IFQTQPYSLLRLCLDCIGKN
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77.7
0.62
0.7
75.8
26.3
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
56.5
0.18
1.7
66.23
40.3

Associated Gene:

Gene:
KLHDC1
Ensembl Gene ID:
ENSAPLG00000007007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007290
61842444 - 61870544
28101