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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61844385_61848312_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61844385 - 61848312
Intron Length:
3928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTCAGTCACT
Flanking Amino Acid:
QLTHLPKSRPRLWHTACLGK
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.8
0.49
1
66.3
44.6
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
48
-0
2.6
78.35
43.6

Associated Gene:

Gene:
KLHDC1
Ensembl Gene ID:
ENSAPLG00000007007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007290
61842444 - 61870544
28101