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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61848386_61849163_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61848386 - 61849163
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATGTTCTTATTT
Flanking Amino Acid:
GGLSSDNVPLSDGWIHSITT
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85
0.79
0.7
80.7
30.3
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
64.5
0.53
1.6
77.51
39.6

Associated Gene:

Gene:
KLHDC1
Ensembl Gene ID:
ENSAPLG00000007007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007290
61842444 - 61870544
28101