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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61849277_61853546_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61849277 - 61853546
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCACCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
LNLDTWTWSGRINISGEKPK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
68.3
0.41
1.1
68.2
36.9
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
KLHDC1
Ensembl Gene ID:
ENSAPLG00000007007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007290
61842444 - 61870544
28101