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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61853606_61859757_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61853606 - 61859757
Intron Length:
6152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTATTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
KGYIFGGRVLQTRMNDLHCL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
79.1
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
35.1
-1.7
3.3
48
42
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
KLHDC1
Ensembl Gene ID:
ENSAPLG00000007007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007290
61842444 - 61870544
28101