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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6185787_6186997_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6185787 - 6186997
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCAATTAATT
Flanking Amino Acid:
SSPEAQSDEDELVPPAPFVT
Intron Amino Acid Position:
1600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.3
0.7
0.9
77.8
40.5
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
56.3
0.28
1.8
75.83
40.6

Associated Gene:

Gene:
QSER1
Ensembl Gene ID:
ENSAPLG00000006676
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006932
6183838 - 6208618
24781
ENSAPLT00000041591
6183838 - 6203866
20029
ENSAPLT00000039527
6180704 - 6202816
22113