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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61881016_61882450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61881016 - 61882450
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
ATTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTATTCTCATTT
Flanking Amino Acid:
QECSQALDETIENVFNIIGA
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.2
59.8
41.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
78.6
33.8
Minor 5ss
37.5
-1.4
3.5
50.1
46.7
Minor BPS
50.6
0.1
1.8
69.55
41.5

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020