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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61885456_61886651_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61885456 - 61886651
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATTCTTACAC
Flanking Amino Acid:
HPDDSRSKFQLKTIETLLGN
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.4
0.62
0.9
68.3
42.2
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
56
0.17
1.7
65.45
39.7

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020