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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61888765_61889345_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61888765 - 61889345
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACA
Flanking Amino Acid:
FPPTEPSATTRAFYGNINFF
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.8
0.54
0.9
67.5
38.5
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
67.2
0.54
1.2
70.89
34.8

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020