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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61892499_61892593_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61892499 - 61892593
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTTTG
5'SS Class:
major
3'SS Sequence:
CTGTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGCTGTTTATTT
Flanking Amino Acid:
EDPGPGSILPRPPLAENITE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
70.1
43.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.4
0.66
0.8
78.1
35
Minor 5ss
39.7
-1.2
2.8
51
45.3
Minor BPS
49
0.01
2
67.71
44.1

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020