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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61892672_61893098_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61892672 - 61893098
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTC
5'SS Class:
major
3'SS Sequence:
GTTTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTCATAATT
Flanking Amino Acid:
PFSVFTTNPCRIQYCTQEII
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.3
36.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.7
0.6
0.9
75.1
35
Minor 5ss
40.5
-1.1
3.5
59
45.7
Minor BPS
64.8
0.54
1.7
84.17
37

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020