About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61893208_61894960_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61893208 - 61894960
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
GCTTGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
ATGGTTCAAACT
Flanking Amino Acid:
PNSNMDIPNHFVKTILSQGH
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.4
38.7
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
79.7
0.67
0.9
72.9
37.4
Minor 5ss
28
-2.5
3
30.3
36.2
Minor BPS
44.3
-0.3
2
61.69
42.9

Associated Gene:

Gene:
POLE2
Ensembl Gene ID:
ENSAPLG00000007393
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007757
61877379 - 61896398
19020