About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6190270_6191747_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6190270 - 6191747
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
TCTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTGTTCTTACAG
Flanking Amino Acid:
VKIEDIETLKVALQTGKEPP
Intron Amino Acid Position:
1446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.8
0.81
0.8
79.9
32.3
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
49.7
-0.1
1.8
55.5
46

Associated Gene:

Gene:
QSER1
Ensembl Gene ID:
ENSAPLG00000006676
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041591
6183838 - 6203866
20029
ENSAPLT00000039527
6180704 - 6202816
22113
ENSAPLT00000006932
6183838 - 6208618
24781