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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61907154_61909178_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61907154 - 61909178
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTCCTCAACA
Flanking Amino Acid:
SEDRSQIRLKPQEAAHSERG
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
75.7
0.58
0.9
70.9
34.1
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
79.4
0.92
1.4
86.61
31.4

Associated Gene:

Gene:
DNAAF2
Ensembl Gene ID:
ENSAPLG00000027399
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033373
61895336 - 61910546
15211