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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61949731_61951938_F

Intron Information:

Intron Rank:
143621
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
61949731 - 61951938
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTCTCAT
5'SS Class:
weak_major
3'SS Sequence:
AATCATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AATCCCAGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.4
61.5
44.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71
0.47
1
66.1
44.1
Minor 5ss
42.9
-0.8
2.7
59.1
45.3
Minor BPS
49.6
-0
1.7
62.16
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027390
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048082
61949633 - 61961088
11456