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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61965221_61965733_F

Intron Information:

Intron Rank:
126586
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
61965221 - 61965733
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGAAAAT
5'SS Class:
major
3'SS Sequence:
ATGGGCACTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
70.1
35.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
50
0
1.1
47
40.1
Minor 5ss
27.7
-2.6
3.3
39
46.4
Minor BPS
66.6
0.6
1.6
85.34
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021771
61963486 - 61965995
2510