About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6198111_6201267_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6198111 - 6201267
Intron Length:
3157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
TTTACGTTTATT
Flanking Amino Acid:
PQFRAPSWQTGMHSSTATEL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.9
36.4
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
29.1
-2.4
3
40.4
45.3
Minor BPS
52.7
0.17
2.4
80.72
41.2

Associated Gene:

Gene:
QSER1
Ensembl Gene ID:
ENSAPLG00000006676
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006932
6183838 - 6208618
24781
ENSAPLT00000041591
6183838 - 6203866
20029
ENSAPLT00000039527
6180704 - 6202816
22113