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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61989405_62036909_F

Intron Information:

Intron Rank:
134410
Intron Class:
major
Intron Phase:
Intron Coordinates:
61989405 - 62036909
Intron Length:
47505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AATGTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.3
0.57
0.9
70.1
35.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
48.4
-0
1.9
67.43
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022240
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029869
61989327 - 62038612
49286