Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62037006_62038093_F

Intron Information:

Intron Rank:

134411

Intron Class:

major

Intron Phase:

Intron Coordinates:

62037006 - 62038093

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

ACTTCATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

75.3

40.8

Major BPS

78.6

0.71

79.6

32.9

Major PPT

72.6

0.51

0.9

65.7

35.1

Minor 5ss

36.4

-1.5

2.9

43.6

43.3

Minor BPS

73.3

0.73

1.5

79.19

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029869

61989327 - 62038612

49286