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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62038416_62040620_F

Intron Information:

Intron Rank:
134405
Intron Class:
major
Intron Phase:
Intron Coordinates:
62038416 - 62040620
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
TTTTTCTTCCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
85.7
0.8
0.7
77.7
31.1
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
47.6
-0.1
3.6
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022240
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029610
62031210 - 62042216
11007
ENSAPLT00000022569
62031210 - 62069983
38774