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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62040756_62042005_F

Intron Information:

Intron Rank:
134409
Intron Class:
major
Intron Phase:
Intron Coordinates:
62040756 - 62042005
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TCCATTGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
70.6
0.46
1
69.4
40.4
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022240
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029610
62031210 - 62042216
11007