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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62040756_62069081_F

Intron Information:

Intron Rank:
134406
Intron Class:
major
Intron Phase:
Intron Coordinates:
62040756 - 62069081
Intron Length:
28326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTGCCTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TAGTCCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
61.5
0.26
1
60.1
39.4
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
63.8
0.41
1.6
70.32
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022240
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022569
62031210 - 62069983
38774