About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62098466_62099582_F

Intron Information:

Intron Rank:
127949
Intron Class:
major
Intron Phase:
Intron Coordinates:
62098466 - 62099582
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTAATCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
71.7
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.6
0.67
0.8
74.2
36.1
Minor 5ss
30.6
-2.2
3.2
36.8
47.7
Minor BPS
68.6
0.66
1.3
82.56
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018944
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023804
62098049 - 62104995
6947