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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62140983_62141615_F

Intron Information:

Intron Rank:
150341
Intron Class:
major
Intron Phase:
Intron Coordinates:
62140983 - 62141615
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GACTCCTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71
34.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
25.5
-2.8
3.5
37.4
47.3
Minor BPS
68.8
0.67
1.7
77.93
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038985
62139837 - 62142205
2369