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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62149616_62152339_F

Intron Information:

Intron Rank:
143366
Intron Class:
major
Intron Phase:
Intron Coordinates:
62149616 - 62152339
Intron Length:
2724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACCTCTTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.8
0.85
0.6
88.4
21.1
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
50.2
-0
1.7
57.32
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027244
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021726
62149076 - 62153262
4187