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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62149616_62155019_F

Intron Information:

Intron Rank:
143367
Intron Class:
major
Intron Phase:
Intron Coordinates:
62149616 - 62155019
Intron Length:
5404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTTGACTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
55.2
0.24
2
76.43
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027244
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030704
62149076 - 62156649
7574